PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009587911.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 402aa MW: 44590.2 Da PI: 9.8214

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009587911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00055	173	195	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg+ F +nL+ H+ + H XP_009587911.1 173 ICSECGEIFMKLENLELHQAVrH 195 5******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.933	172	200	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	174	195	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.44E-22	197	401	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.6E-12	197	400	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAKSKRNPSI KRSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK 60 IPKCEGERRD DDNNNDKKCK KMKCSGSICS NTKVMHRPEP SPSPPKGRSC KNDGSTKVNL 120 NNSFSSASSS LHSASSPATS SLRGMPFRKL SGCYECRMVV DPIARDPSLR STICSECGEI 180 FMKLENLELH QAVRHAVTEL GPEDTSRNIV EIIFQSSWLN KKTPVCKIDR ILKIRNTPTT 240 ISRFEEYRDG IKSKATNLPK KHPRCIADGN ELLRFLCTTF ICSLGLNGSS NLCTLPNCNV 300 CTIIKNGFKL ATTDGTKKGI LTTATSGKAH DSTRVVSHDD NDKRAMLVCR VIAGRVKKTL 360 DGNLEEYDSI AGAAGVYSNL DELYVFNPKA ILPCFVVIYK GF

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAKSKRNPSI KRSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK  60
IPKCEGERRD DDNNNDKKCK KMKCSGSICS NTKVMHRPEP SPSPPKGRSC KNDGSTKVNL  120
NNSFSSASSS LHSASSPATS SLRGMPFRKL SGCYECRMVV DPIARDPSLR STICSECGEI  180
FMKLENLELH QAVRHAVTEL GPEDTSRNIV EIIFQSSWLN KKTPVCKIDR ILKIRNTPTT  240
ISRFEEYRDG IKSKATNLPK KHPRCIADGN ELLRFLCTTF ICSLGLNGSS NLCTLPNCNV  300
CTIIKNGFKL ATTDGTKKGI LTTATSGKAH DSTRVVSHDD NDKRAMLVCR VIAGRVKKTL  360
DGNLEEYDSI AGAAGVYSNL DELYVFNPKA ILPCFVVIYK GF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	3e-96	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587911.1	0.0	PREDICTED: uncharacterized protein LOC104085555
TrEMBL	A0A1S4CHY0	0.0	A0A1S4CHY0_TOBAC; uncharacterized protein LOC107819234 isoform X1
STRING	XP_009587911.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-100	C2H2-like zinc finger protein