PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587883.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 298aa    MW: 34126.4 Da    PI: 8.5349
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.6e-50331573128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskk 96 
                     pGfrFhPtdeelv +yL++kve++++ l + ik++diyk++PwdLp++ +++e+ewy+++kr +ky+++ r+nr ++ sg+Wkatg dk+++s k
  XP_009587883.1  33 PGFRFHPTDEELVGFYLRRKVEKRPIGL-QLIKQMDIYKYDPWDLPQASNKGENEWYYYCKRGRKYKNSVRPNRvTAGSGFWKATGIDKSIYS-K 125
                     9*************************99.89***************98889999********************5556***************.9 PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                     ge++glkk+Lv+y+g+a kg+kt+W+mhe+rl
  XP_009587883.1 126 GEVIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 157
                     99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.29331181IPR003441NAC domain
SuperFamilySSF1019414.32E-5431181IPR003441NAC domain
PfamPF023653.0E-2433157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEVEKISSNS IVTNNNYYNK LKAEEEDEDV PLPGFRFHPT DEELVGFYLR RKVEKRPIGL  60
QLIKQMDIYK YDPWDLPQAS NKGENEWYYY CKRGRKYKNS VRPNRVTAGS GFWKATGIDK  120
SIYSKGEVIG LKKSLVYYRG SAGKGTKTEW MMHEFRLPNL HSANTIAQEA EAWTLCRILK  180
RNASYRKFIP DWKVAAATPQ PKICSSNIDS SKSSQIYISF STPHVVKQNT CSDHVENKQL  240
LNVGQQSSGS ANDESMLSIS TVATASNSNS PLDFNEWLEH GNWDELKSIF ELSFDPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-513318722174NAC domain-containing protein 19
3swm_B3e-513318722174NAC domain-containing protein 19
3swm_C3e-513318722174NAC domain-containing protein 19
3swm_D3e-513318722174NAC domain-containing protein 19
3swp_A3e-513318722174NAC domain-containing protein 19
3swp_B3e-513318722174NAC domain-containing protein 19
3swp_C3e-513318722174NAC domain-containing protein 19
3swp_D3e-513318722174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587883.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
RefseqXP_016455213.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-85NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S3YSV30.0A0A1S3YSV3_TOBAC; transcription factor JUNGBRUNNEN 1-like
STRINGXP_009587883.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-86NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]