PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 33087.4 Da PI: 9.2026 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108 | 1.1e-33 | 58 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+P+d+el+ e+L++kv+ + ++++ + ++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + XP_009587632.1 58 LPAGVKFDPSDQELL-EHLEAKVRLDAqklhplIDEFIHtLEGEnGICYTHPEKLP-GVSQDGLIRHFFHRPSKAYTTGTRKRRKVHtdiegnET 150 799************.99****998875565442222222443346**********.555555677******************74444555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ kg+++g kk+Lv+y g+++k+ekt+Wvmh+y+l XP_009587632.1 151 RWHKTGKTRPVVV-KGKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 198 8************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.27E-38 | 53 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.172 | 58 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-15 | 59 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MFLTKEMICI NDSANEQSIP TNVNNESPKN TTKTRTCPSC GHLIKSEEKA GIHNLPGLPA 60 GVKFDPSDQE LLEHLEAKVR LDAQKLHPLI DEFIHTLEGE NGICYTHPEK LPGVSQDGLI 120 RHFFHRPSKA YTTGTRKRRK VHTDIEGNET RWHKTGKTRP VVVKGKVKGH KKILVLYTNY 180 GKQRKPEKTN WVMHQYHLGD NEDEKEGELV VSKVFYQTQP RQCGNSLLRN NCPPPAVRAN 240 IGQASQFRDN TTFVQCFNNP TLISFDQYEH NNRSTPRLPN FNLPDTTFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-108 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587632.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Refseq | XP_016471988.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-119 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1S4A5Q9 | 0.0 | A0A1S4A5Q9_TOBAC; NAC domain-containing protein 73-like | ||||
STRING | XP_009587632.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-108 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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