PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587243.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 545aa    MW: 60057.9 Da    PI: 8.7296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.44.5e-17250299255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f +Lre++P +    ++K +Ka+ L ++veYI+ Lq
  XP_009587243.1 250 RSKHSATEQRRRSKINDRFLKLREIIPRS----DQKRDKASFLLEVVEYIQFLQ 299
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.2E-22246311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-17246313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.52248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-14250303No hitNo description
PfamPF000101.7E-14250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGYLK THDFLQPLEQ ARKTVGKTET  60
KVEVEAIEKP PSAAHILPGG IGTYSISYLQ QRIPTPEPNI FAVTQTSSTD REDRNSNCSS  120
YSGSGFTIWN ESAIKKGKTG KENLAGDRHV LRGINIGGQP TTSLERQSQL SSNHNHNTAT  180
LSTLSSAPQP SAFENQSFLH MMKSATNAHE EDDDEEEEFI VKKESPSHSR GNLSVRVDGK  240
SSDRKPNTPR SKHSATEQRR RSKINDRFLK LREIIPRSDQ KRDKASFLLE VVEYIQFLQE  300
KVHKYEGSYQ GSENRPLILP WNKCHPMTQG FIDHSQGTNS ASSPGIVCAG KLDESKIAIS  360
ATSPVNGQTL EPNRISAVKQ SSQQSELTNK VATLCKQPNA FPFCGSTSIA SLQSRLAPDA  420
DSLEVKSQSQ YWLTRSNMTD CAVTNDKLKG QEVSTEGGTI SISSVYSQRL LNTLKQALQD  480
SGVDLSQASM SVKIDLGKRV NDSLNASVPN VKGDNISTSN LLNPQLIDTS TREESVHAFK  540
RLKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587243.10.0PREDICTED: transcription factor BIM2-like isoform X2
TrEMBLA0A1S4ACQ10.0A0A1S4ACQ1_TOBAC; transcription factor BIM2-like isoform X2
STRINGXP_009587237.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.47e-92bHLH family protein