PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587237.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 547aa    MW: 60258.1 Da    PI: 8.5485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.44.5e-17252301255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f +Lre++P +    ++K +Ka+ L ++veYI+ Lq
  XP_009587237.1 252 RSKHSATEQRRRSKINDRFLKLREIIPRS----DQKRDKASFLLEVVEYIQFLQ 301
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-17248315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-22248313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.52250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-14252305No hitNo description
PfamPF000101.7E-14252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGYLK THDFLQPLEQ ARKTVGKTET  60
KVEVEAIEKP PSAAHILPGG IGTYSISYLQ QRIPTPEPNI FAVTQTSSTD REDRNSNCSS  120
YSGSGFTIWN ESAIKKGKTG KENLAGDRHV LREAGINIGG QPTTSLERQS QLSSNHNHNT  180
ATLSTLSSAP QPSAFENQSF LHMMKSATNA HEEDDDEEEE FIVKKESPSH SRGNLSVRVD  240
GKSSDRKPNT PRSKHSATEQ RRRSKINDRF LKLREIIPRS DQKRDKASFL LEVVEYIQFL  300
QEKVHKYEGS YQGSENRPLI LPWNKCHPMT QGFIDHSQGT NSASSPGIVC AGKLDESKIA  360
ISATSPVNGQ TLEPNRISAV KQSSQQSELT NKVATLCKQP NAFPFCGSTS IASLQSRLAP  420
DADSLEVKSQ SQYWLTRSNM TDCAVTNDKL KGQEVSTEGG TISISSVYSQ RLLNTLKQAL  480
QDSGVDLSQA SMSVKIDLGK RVNDSLNASV PNVKGDNIST SNLLNPQLID TSTREESVHA  540
FKRLKTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587237.10.0PREDICTED: transcription factor BIM2-like isoform X1
TrEMBLA0A1S4ACK60.0A0A1S4ACK6_TOBAC; transcription factor BIM2-like isoform X1
STRINGXP_009587237.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-92bHLH family protein