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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587237.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 547aa MW: 60258.1 Da PI: 8.5485 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.4 | 4.5e-17 | 252 | 301 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f +Lre++P + ++K +Ka+ L ++veYI+ Lq XP_009587237.1 252 RSKHSATEQRRRSKINDRFLKLREIIPRS----DQKRDKASFLLEVVEYIQFLQ 301 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.07E-17 | 248 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-22 | 248 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.52 | 250 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-14 | 252 | 305 | No hit | No description |
Pfam | PF00010 | 1.7E-14 | 252 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-12 | 256 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MELPQSRTFG AEGRKKTHDF LSLYSPIEQD PRPPQGGYLK THDFLQPLEQ ARKTVGKTET 60 KVEVEAIEKP PSAAHILPGG IGTYSISYLQ QRIPTPEPNI FAVTQTSSTD REDRNSNCSS 120 YSGSGFTIWN ESAIKKGKTG KENLAGDRHV LREAGINIGG QPTTSLERQS QLSSNHNHNT 180 ATLSTLSSAP QPSAFENQSF LHMMKSATNA HEEDDDEEEE FIVKKESPSH SRGNLSVRVD 240 GKSSDRKPNT PRSKHSATEQ RRRSKINDRF LKLREIIPRS DQKRDKASFL LEVVEYIQFL 300 QEKVHKYEGS YQGSENRPLI LPWNKCHPMT QGFIDHSQGT NSASSPGIVC AGKLDESKIA 360 ISATSPVNGQ TLEPNRISAV KQSSQQSELT NKVATLCKQP NAFPFCGSTS IASLQSRLAP 420 DADSLEVKSQ SQYWLTRSNM TDCAVTNDKL KGQEVSTEGG TISISSVYSQ RLLNTLKQAL 480 QDSGVDLSQA SMSVKIDLGK RVNDSLNASV PNVKGDNIST SNLLNPQLID TSTREESVHA 540 FKRLKTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587237.1 | 0.0 | PREDICTED: transcription factor BIM2-like isoform X1 | ||||
TrEMBL | A0A1S4ACK6 | 0.0 | A0A1S4ACK6_TOBAC; transcription factor BIM2-like isoform X1 | ||||
STRING | XP_009587237.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3969 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 2e-92 | bHLH family protein |