PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009587190.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 756aa MW: 85617.1 Da PI: 5.8987

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009587190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	364.2	1.8e-111	383	754	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++l+++cA+av+++d + a +lL+++++++ p gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ +P+ k+s XP_009587190.1 383 LRTLMINCAQAVAADDSKSAYELLKQIRQHSYPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASCPFRKISS 474 57899*********************************************************999998...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I+ +++++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g +e++ee g+rLa++A++++vpfe+++ +ak++e+ XP_009587190.1 475 FASNKTIMIKAKNATRVHVIDFGILYGFQWPTFIQRIAEREGGPPKLRITGIEFPQPGfrPAERIEESGRRLADYARSFNVPFEYHA-IAKKWET 568 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++++L+++++E laV + ++ ++l+de+v +s r+ vL l+++++P+++++ + ++++ F++rf eal ++salfd+le+ +pre er XP_009587190.1 569 ITVDDLKLDKDEFLAVTCLYRFKNLYDETVVADSSRTVVLTLIRKINPDIFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERG 663 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Ere++gre+ nv+aceg er+er et+++W+ r+ a F+++p++ + +++a +r + + + ++e+s +l+lgWk+r+++++S+W+ XP_009587190.1 664 LIEREIFGREALNVIACEGWERVERPETYKQWQVRILGARFTQIPFEREFVNKAVEKVRLGYHRDFVIDEDSRWLLLGWKGRTIYAISCWK 754 ********************************************************99999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.233	357	734	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-109	383	754	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MDPRFNGNPS SLNDFRLGNQ SLPISSDGRM INGPRFELIY PDQKLHNGPR LENSFVQHNF 60 GGVGCINGDR LPSNLESRSD LGGVEEDFNE DIDFSDVVLS YINQMLMEEE MEDKTDMLQE 120 SLELQAKEKS FYEALGKKYP PSPEQNAFTN QYSESPDDYF SGSIYNSTSN TSENSGNLVD 180 SRGVNISTDY SSAYVESLSF RNTSVCSSNS GNTMVDGFLD SPVSSFHIPD IYNESQSIWS 240 FRKGVEEASK FLPTNNKLLN NDLPSRESKG EAGYVVGQVG EKDEVDTSPT EARGRKNPQR 300 DDNYNEEERS SKQAAIFTES TLRSEEFDIV LLHSMGKGEE ALEAYRQNLR NAKSKTTVQI 360 PKGSKGGKGR GKKQGGKKEV IDLRTLMINC AQAVAADDSK SAYELLKQIR QHSYPFGDGN 420 QRLAHCFADG LEARLAGTGS QIYKALVNKR TSAADLLKAY HLYLASCPFR KISSFASNKT 480 IMIKAKNATR VHVIDFGILY GFQWPTFIQR IAEREGGPPK LRITGIEFPQ PGFRPAERIE 540 ESGRRLADYA RSFNVPFEYH AIAKKWETIT VDDLKLDKDE FLAVTCLYRF KNLYDETVVA 600 DSSRTVVLTL IRKINPDIFI HGIVNGAYSA PFFVTRFREA LFHFSALFDM LETIVPREIP 660 ERGLIEREIF GREALNVIAC EGWERVERPE TYKQWQVRIL GARFTQIPFE REFVNKAVEK 720 VRLGYHRDFV IDEDSRWLLL GWKGRTIYAI SCWKPV

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MDPRFNGNPS SLNDFRLGNQ SLPISSDGRM INGPRFELIY PDQKLHNGPR LENSFVQHNF  60
GGVGCINGDR LPSNLESRSD LGGVEEDFNE DIDFSDVVLS YINQMLMEEE MEDKTDMLQE  120
SLELQAKEKS FYEALGKKYP PSPEQNAFTN QYSESPDDYF SGSIYNSTSN TSENSGNLVD  180
SRGVNISTDY SSAYVESLSF RNTSVCSSNS GNTMVDGFLD SPVSSFHIPD IYNESQSIWS  240
FRKGVEEASK FLPTNNKLLN NDLPSRESKG EAGYVVGQVG EKDEVDTSPT EARGRKNPQR  300
DDNYNEEERS SKQAAIFTES TLRSEEFDIV LLHSMGKGEE ALEAYRQNLR NAKSKTTVQI  360
PKGSKGGKGR GKKQGGKKEV IDLRTLMINC AQAVAADDSK SAYELLKQIR QHSYPFGDGN  420
QRLAHCFADG LEARLAGTGS QIYKALVNKR TSAADLLKAY HLYLASCPFR KISSFASNKT  480
IMIKAKNATR VHVIDFGILY GFQWPTFIQR IAEREGGPPK LRITGIEFPQ PGFRPAERIE  540
ESGRRLADYA RSFNVPFEYH AIAKKWETIT VDDLKLDKDE FLAVTCLYRF KNLYDETVVA  600
DSSRTVVLTL IRKINPDIFI HGIVNGAYSA PFFVTRFREA LFHFSALFDM LETIVPREIP  660
ERGLIEREIF GREALNVIAC EGWERVERPE TYKQWQVRIL GARFTQIPFE REFVNKAVEK  720
VRLGYHRDFV IDEDSRWLLL GWKGRTIYAI SCWKPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-47	366	755	1	379	Protein SCARECROW
5b3h_D	1e-47	366	755	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587190.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1S3X450	0.0	A0A1S3X450_TOBAC; scarecrow-like protein 9
TrEMBL	A0A1U7US07	0.0	A0A1U7US07_NICSY; scarecrow-like protein 9
STRING	XP_009587190.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein