PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 444aa MW: 49719.6 Da PI: 5.7858 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 3e-09 | 249 | 296 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009587041.1 249 SHSLAERVRREKISERMRFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 296 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-16 | 243 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-10 | 243 | 300 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 245 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 245 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 249 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-8 | 251 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MNIALPEMLH SITGNGGNGS SEMSVLERQR ARMKWQQEQL QQQEMMSYFD GQNDQQLMNF 60 YSQTAGAQQF HGQINNVNDE SLNELVTRAI KPDPCLENNW TIGTDGLGYV PTGVGYGGTT 120 PQLGLNYAIS RTTSCPPNMA DNAVSDGKAK ESMMSSNRGR ESFKKRKADK NQHLKELAEE 180 ETKDKKMKEC IEEGDSKVTT EKYNNRRSTN NSNNSKESSE SSKEKSKITE DKKPDYIHVR 240 ARRGQATDSH SLAERVRREK ISERMRFLQD LVPGCNKITG KAGMLDEIIN YVQSLQRQVE 300 FLSMKLAAVN PRLDIEIDNF FNKDIFATST ANFPTVGAGT SSEMLSMAQR QFNSLQQIVS 360 SSGFEMGILN LSEMALRRTT SAPVSIPEIF LDSSNINQVQ SFPTWDTDLD NMYAMDLQQG 420 RSAQFLPHPS TGFVEAGNDL KMGM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014300 | 0.0 | BT014300.1 Lycopersicon esculentum clone 133550R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587041.1 | 0.0 | PREDICTED: transcription factor bHLH63-like | ||||
Refseq | XP_016441121.1 | 0.0 | PREDICTED: transcription factor bHLH63-like | ||||
Swissprot | Q8GY61 | 2e-58 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A1S3XMF2 | 0.0 | A0A1S3XMF2_TOBAC; transcription factor bHLH63-like | ||||
STRING | XP_009587041.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6538 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 2e-55 | cryptochrome-interacting basic-helix-loop-helix 1 |