PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009586993.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 417aa MW: 44674.4 Da PI: 8.1646

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009586993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.3	9e-16	231	276	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++++P++ K +Ka++L +++eY+k+Lq XP_009586993.1 231 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 276 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-19	224	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.606	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-18	231	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.64E-16	231	279	No hit	No description
Pfam	PF00010	2.3E-13	231	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-17	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MHGLGPPRVP NNKPISNYGG TLESIVNQGT RSVPHHHQKS ALDGSGHGGD EVVPWFNYHH 60 VVADTPLVPG SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC SGATNNRDWM 120 AAPLVGTEPT HEGSSRADMS VSGSATCAGD SRQLTVDTYD REMGTGMYTS TSMGSPENTS 180 SDKQCTNRTG DDHDSVCHSR SKREVGDEED EKKGSKNSSS STKRKRAAAI HNQSERKRRD 240 KINQRMKTLQ KMVPNSSKTD KASMLDEVIE YLKQLQSQVN MMSRMNMSPA MMLPLAMQQQ 300 LQMSMMAAPM GMGMGMGMGM GMGMGVAGVL DINTLSRPNI TGLPPFLHPT AAAAAAFMQP 360 MTSWDGSTDR LNAAAVPDPL AALLACQSQP MTMDAYSRMA ALYQQFQQPA AGSGPKN

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MHGLGPPRVP NNKPISNYGG TLESIVNQGT RSVPHHHQKS ALDGSGHGGD EVVPWFNYHH  60
VVADTPLVPG SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC SGATNNRDWM  120
AAPLVGTEPT HEGSSRADMS VSGSATCAGD SRQLTVDTYD REMGTGMYTS TSMGSPENTS  180
SDKQCTNRTG DDHDSVCHSR SKREVGDEED EKKGSKNSSS STKRKRAAAI HNQSERKRRD  240
KINQRMKTLQ KMVPNSSKTD KASMLDEVIE YLKQLQSQVN MMSRMNMSPA MMLPLAMQQQ  300
LQMSMMAAPM GMGMGMGMGM GMGMGVAGVL DINTLSRPNI TGLPPFLHPT AAAAAAFMQP  360
MTSWDGSTDR LNAAAVPDPL AALLACQSQP MTMDAYSRMA ALYQQFQQPA AGSGPKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	238	RKRAAAIHNQSERKRR
2	234	239	ERKRRD
3	235	240	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586993.1	0.0	PREDICTED: transcription factor UNE10 isoform X3
Swissprot	Q8GZ38	4e-80	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A1S4ALX7	0.0	A0A1S4ALX7_TOBAC; transcription factor UNE10-like
STRING	XP_009586991.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]