PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009586992.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 445aa MW: 47527.3 Da PI: 5.8537

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009586992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.7e-05	282	304	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 ++s++ +Ka++L +++eY+k+Lq XP_009586992.1 282 NQSERTDKASMLDEVIEYLKQLQ 304 5899******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.00116	281	307	No hit	No description
SuperFamily	SSF47459	1.15E-6	282	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-6	282	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVP 60 NNKPISNYGG TLESIVNQGT RSVPHHHQKS ALDGSGHGGD EVVPWFNYHH VVADTPLVPG 120 SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC SGATNNRDWM AAPLVGTEPT 180 HEGSSRADMS VSGSATCAGD SRQLTVDTYD REMGTGMYTS TSMGSPENTS SDKQCTNRTG 240 DDHDSVCHSR SKREVGDEED EKKGSKNSSS STKRKRAAAI HNQSERTDKA SMLDEVIEYL 300 KQLQSQVNMM SRMNMSPAMM LPLAMQQQLQ MSMMAAPMGM GMGMGMGMGM GMGVAGVLDI 360 NTLSRPNITG LPPFLHPTAA AAAAFMQPMT SWDGSTDRLN AAAVPDPLAA LLACQSQPMT 420 MDAYSRMAAL YQQFQQPAAG SGPKN

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSVPHHHQKS ALDGSGHGGD EVVPWFNYHH VVADTPLVPG  120
SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC SGATNNRDWM AAPLVGTEPT  180
HEGSSRADMS VSGSATCAGD SRQLTVDTYD REMGTGMYTS TSMGSPENTS SDKQCTNRTG  240
DDHDSVCHSR SKREVGDEED EKKGSKNSSS STKRKRAAAI HNQSERTDKA SMLDEVIEYL  300
KQLQSQVNMM SRMNMSPAMM LPLAMQQQLQ MSMMAAPMGM GMGMGMGMGM GMGVAGVLDI  360
NTLSRPNITG LPPFLHPTAA AAAAFMQPMT SWDGSTDRLN AAAVPDPLAA LLACQSQPMT  420
MDAYSRMAAL YQQFQQPAAG SGPKN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586992.1	0.0	PREDICTED: transcription factor UNE10 isoform X2
TrEMBL	A0A1S4ALX7	0.0	A0A1S4ALX7_TOBAC; transcription factor UNE10-like
STRING	XP_009586991.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-55	bHLH family protein