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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009586992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 445aa MW: 47527.3 Da PI: 5.8537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.3 | 3.7e-05 | 282 | 304 | 33 | 55 |
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 ++s++ +Ka++L +++eY+k+Lq XP_009586992.1 282 NQSERTDKASMLDEVIEYLKQLQ 304 5899******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 0.00116 | 281 | 307 | No hit | No description |
SuperFamily | SSF47459 | 1.15E-6 | 282 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-6 | 282 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVP 60 NNKPISNYGG TLESIVNQGT RSVPHHHQKS ALDGSGHGGD EVVPWFNYHH VVADTPLVPG 120 SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC SGATNNRDWM AAPLVGTEPT 180 HEGSSRADMS VSGSATCAGD SRQLTVDTYD REMGTGMYTS TSMGSPENTS SDKQCTNRTG 240 DDHDSVCHSR SKREVGDEED EKKGSKNSSS STKRKRAAAI HNQSERTDKA SMLDEVIEYL 300 KQLQSQVNMM SRMNMSPAMM LPLAMQQQLQ MSMMAAPMGM GMGMGMGMGM GMGVAGVLDI 360 NTLSRPNITG LPPFLHPTAA AAAAFMQPMT SWDGSTDRLN AAAVPDPLAA LLACQSQPMT 420 MDAYSRMAAL YQQFQQPAAG SGPKN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009586992.1 | 0.0 | PREDICTED: transcription factor UNE10 isoform X2 | ||||
TrEMBL | A0A1S4ALX7 | 0.0 | A0A1S4ALX7_TOBAC; transcription factor UNE10-like | ||||
STRING | XP_009586991.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-55 | bHLH family protein |