PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009586991.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 467aa    MW: 50196.5 Da    PI: 6.7468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009586991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15281326555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd+iN+++ +L++++P++      K +Ka++L +++eY+k+Lq
  XP_009586991.1 281 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 326
                     9************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-19274343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.606276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-16281329No hitNo description
SMARTSM003531.1E-17282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVP  60
NNKPISNYGG TLESIVNQGT RSVPHHHQKS ALDGSGHGGD EVVPWFNYHH VVADTPLVPG  120
SLTMAKDALV PCSANSNYHR RPPSSVQVPG LDGSTHVGSC SGATNNRDWM AAPLVGTEPT  180
HEGSSRADMS VSGSATCAGD SRQLTVDTYD REMGTGMYTS TSMGSPENTS SDKQCTNRTG  240
DDHDSVCHSR SKREVGDEED EKKGSKNSSS STKRKRAAAI HNQSERKRRD KINQRMKTLQ  300
KMVPNSSKTD KASMLDEVIE YLKQLQSQVN MMSRMNMSPA MMLPLAMQQQ LQMSMMAAPM  360
GMGMGMGMGM GMGMGVAGVL DINTLSRPNI TGLPPFLHPT AAAAAAFMQP MTSWDGSTDR  420
LNAAAVPDPL AALLACQSQP MTMDAYSRMA ALYQQFQQPA AGSGPKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273288RKRAAAIHNQSERKRR
2284289ERKRRD
3285290RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586991.10.0PREDICTED: transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-100UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A1S4ALX70.0A0A1S4ALX7_TOBAC; transcription factor UNE10-like
STRINGXP_009586991.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]