PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009586881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 184aa    MW: 21188 Da    PI: 9.7499
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009586881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23121164144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     +aep+rCrR+DGKkWRCsr+v++++k+CE+H+hrgr+r rk++e
  XP_009586881.1 121 EAEPRRCRRSDGKKWRCSRTVVQNQKYCEKHMHRGRQRPRKHVE 164
                     58****************************************97 PP

2QLQ42.22.4e-156094337
             QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    FT  Q q+L++Q  +yKy+ a+ PvP++L+ +i+k
  XP_009586881.1 60 FTFLQRQELEQQFFIYKYIEAGIPVPSHLIIPIFK 94
                    9999*****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-55894IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.1735994IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-116093IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.307121165IPR014977WRC domain
PfamPF088793.2E-19122164IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDLKIPPPNN IASKKDYYDV SNGVEGKCST ELGLNLELSQ HGDNHEYSSY SKFNTSGYGF  60
TFLQRQELEQ QFFIYKYIEA GIPVPSHLII PIFKSITCSV KGLQYVMGYG HLGWELKSNM  120
EAEPRRCRRS DGKKWRCSRT VVQNQKYCEK HMHRGRQRPR KHVELTSSNL QLSTSTIKSS  180
SRSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586881.11e-137PREDICTED: growth-regulating factor 10-like
SwissprotQ6AWX72e-39GRF12_ORYSJ; Growth-regulating factor 12
SwissprotQ6EPP92e-39GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A2G3AE894e-75A0A2G3AE89_CAPAN; Growth-regulating factor 10
STRINGXP_009586881.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1447199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-26growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]