PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009586687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 248aa MW: 27813.2 Da PI: 9.7989 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.9 | 5.7e-26 | 147 | 190 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e XP_009586687.1 147 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 190 79***************************************987 PP | |||||||
2 | QLQ | 46.3 | 1.3e-16 | 74 | 109 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+F+ Q+q+L+ Q+l+y++++a++PvPpeLl ++ XP_009586687.1 74 SYFSLGQWQELELQALIYRHFIAGAPVPPELLHLVK 109 789****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.4E-8 | 74 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.675 | 75 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.3E-11 | 76 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.141 | 147 | 191 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.5E-22 | 148 | 190 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDFNLKQWRN QQHESEEQET PTSSAKIPRL HLDFDSVSAS DSDSALPLFV SEPTTKLSDS 60 TTTTPTKFPK MGSSYFSLGQ WQELELQALI YRHFIAGAPV PPELLHLVKK SIITSPSSYY 120 FSHPFQQYPH YQQTLMQSGY WGRAAMDPEP GRCRRTDGKK WRCSRDVVAG QKYCERHVHR 180 GRSRSRKPVE IPTPAINGGK LNTSTTVSHQ NLAKMAGHSA AAAAATHFSI SGPSPSIQTL 240 HLNQRYIS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009586687.1 | 0.0 | PREDICTED: growth-regulating factor 3-like | ||||
Swissprot | Q9SJR5 | 3e-65 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | A0A1S4ANY4 | 0.0 | A0A1S4ANY4_TOBAC; growth-regulating factor 3-like isoform X1 | ||||
STRING | XP_009586687.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 7e-60 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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