 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009152116.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
RAV |
| Protein Properties |
Length: 344aa MW: 38515 Da PI: 9.7982 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009152116.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 42.6 | 1.5e-13 | 64 | 112 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+ +++g
XP_009152116.1 64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAHRFRG 112
689***9788.8*********3.....5************************998 PP
|
| 2 | B3 | 95.8 | 2.8e-30 | 189 | 293 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+ tpsd+++++r v+pk+ ae+h g ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + Fk+++ ++
XP_009152116.1 189 FEKAVTPSDAGELNRXVIPKHQAEKHfplplsGDVSVRGTLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNGQD 283
89******************************99999****************************************************987799 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
++l++++ +k
XP_009152116.1 284 QQLYIGWKSK 293
9999999776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MDAASSVDES STSTDSVHTP AKIPPATARK SPSPASLYRM GSGSSVVLDS ENGVEAESRK 60
LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA RAYDVAAHRF RGRDAVTNFK 120
ADTTLGNGDE VEFLNAHSKA EIVDMLRKHT YKEELEQRKR NLHGKGNTKE TAFAAVRVAT 180
GFKTAETLFE KAVTPSDAGE LNRXVIPKHQ AEKHFPLPLS GDVSVRGTLL NFEDVNGKVW 240
RFRYSYWNSS QSYVLTKGWS RFVKEKRLCA GDLISFKRSN GQDQQLYIGW KSKSESDQDT 300
GRVVVRLFGV DITSLKSQSD VVMKEETEML SLRCNKKQRL VTTI
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
