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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009151811.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
NAC |
| Protein Properties |
Length: 309aa MW: 34936.6 Da PI: 5.6503 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009151811.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 176.4 | 7.9e-55 | 20 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
l pGfrFhPtdeel+++yL++kv ++ +++ +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++
XP_009151811.1 20 LLPGFRFHPTDEELISHYLRPKVLNTVFSA-VAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATRAGYWKATGKDKEIFK- 112
579************************999.67***************98999*****************************************. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++lvg+kktLvfy+grapkg+kt+Wv+heyrl
XP_009151811.1 113 EKALVGMKKTLVFYEGRAPKGVKTNWVIHEYRL 145
999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MDYEVSRTGE IIEDSEQIDL LPGFRFHPTD EELISHYLRP KVLNTVFSAV AIGEVDLNKV 60
EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATRAGY WKATGKDKEI FKEKALVGMK 120
KTLVFYEGRA PKGVKTNWVI HEYRLDGIYA NDNLPVTAKN EWVISRVFQK GADGKKMHLY 180
GLTMLGSGIN QVEPAGLPPL SNVTCFSDQT IVEDKSHISE LKDECNVTML GSSSTHSIPN 240
IGSMLYSDPV FMQDNSSILM MLLDSEETQF KKNIQGFGTA EKELTTSSWH DHGLAGSAGS 300
VEVDCYWNF
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-53 | 17 | 176 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 9e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 9e-53 | 17 | 176 | 14 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Age-dependent accumulation. First observed in young seedlings in cotyledons and regularly in the tip regions of very young leaves. Accumulates strongly in older leaf parts at the senescence onset. In flowers, present in mature organs such as old sepals, petals, old stamens, mature anthers, and pollen grains. Confined to floral organ abscission zone of mature flowers. Also observed in roots. {ECO:0000269|PubMed:21303842}. |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in root cortex, phloem, atrichoblast and quiescent center (QC), and, to a lower extent, in root endodermis, xylem, pericycle, columella and lateral root cap (LRC) (PubMed:16581911). Expressed in roots, cotyledons, very young leaves, senescing leaves, mature flowers and pollen (PubMed:21303842). {ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:21303842}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF738272 | 0.0 | KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds. |
