PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151654.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 418aa    MW: 45456 Da    PI: 7.0401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08307354455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009151654.1 307 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 354
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16301367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.24E-10301358No hitNo description
PROSITE profilePS5088815.37303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16303368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-6307354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDNELFMNTE LPPPSEMAMH FEQPSSSSAM LNWGLMDPNL ARNSPPQDCF MWEKSTEQQQ  60
SIFDSALSSL VSSPTPSNSN FSGGGGDGFI IRELIGKLGN IGNTSGDIYG APMNGNVSRS  120
ASCYATPMSS PPPMMNRTAP LTEFSGDPGF AERAAKFSCF GSRSFNGRTN SGIPVNNGKI  180
VNSGKLTRVS STPALKALAS PEFASAARPM IPAGDSPPKL PGEFSRKRKS VSKGKSKDNP  240
LPAASPSPSF SKTAERKEVS EEKGGKRRRE DEGEEEEGNK GGNDTKPPEP PKDYIHVRAR  300
RGQATDSHSL AERVRREKIG ERMKLLQDLV PGCNKVTGKA LMLDEIINYV QSLQRQVEFL  360
SMKLSSVNDT RLEFNVDALV SKDAYQMFSE EDLQSIVGMG VAHNPNHESQ SQNMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-133AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-133BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-133BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151654.10.0PREDICTED: transcription factor bHLH78 isoform X2
SwissprotQ9FJL41e-180BH078_ARATH; Transcription factor bHLH78
TrEMBLM4F8R60.0M4F8R6_BRARP; Uncharacterized protein
STRINGBra037478.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]