PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151462.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 636aa    MW: 71884.3 Da    PI: 6.354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.62.4e-53141411128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeel+++yL+ k++g++le+ +vi+e+d++k+ePwdLp  + +k++++ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++
  XP_009151462.1  14 LPLGFRFRPTDEELINHYLRLKINGRDLEV-RVIPEIDVCKWEPWDLPglSVIKTDDQEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIK 107
                     699***************************.99***************6448899999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k+  +g+kktLvfy+grap+ge+t+W+mheyr+
  XP_009151462.1 108 S-KKMIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 141
                     *.9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-645164IPR003441NAC domain
PROSITE profilePS5100558.64814164IPR003441NAC domain
PfamPF023652.0E-2715140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MATETQATLS MESLPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP  60
GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV  120
FYRGRAPRGE RTNWIMHEYR ATDKDLDGTG PGQSPYVLCR LFHKPTDVAN CDEVENVNAT  180
PTTTRCSRED NSSEMVQETA TSRVHAQNIS DDTERCPSDK GSDVKPDAPV IKTENHGETS  240
RAKDRGKSIV EESPFARDFS SLYGPSFDQT SYTPVPSSIG FPASHVDSMY SSDFGNCQYG  300
LHFQDGASIQ DESLADVLDE VFHNHNQSST EPKDFALPKM MHWSFPRDTF GFVNGSAEAS  360
FPQFAPDVGA SGLVSDHYVD SKEAVEIQSS SGSSRTVTPL HSNVLGQHPP VSYATMDPFI  420
SNVNQREQEQ LPVDRNIILS EFNARARETQ TDLDFVVNQG TAPRRIRLQI EQPFTPVNNE  480
KGRDVDNHEE EEVQSAMTKI VEEDEKCFLD KDKSRAQGHA SLSESTNLNT QGTAHRRIRL  540
QTRIRKLPII PKNTGRDSNH SEEVAMHSKE KEDVSASSSS SSWQKQKLMR KRMVKCSSMV  600
IIMAVMVLLV GIWKESRDAK CSFLFHQLDS FKGMFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-4711667170NAC domain-containing protein 19
3swm_B4e-4711667170NAC domain-containing protein 19
3swm_C4e-4711667170NAC domain-containing protein 19
3swm_D4e-4711667170NAC domain-containing protein 19
3swp_A4e-4711667170NAC domain-containing protein 19
3swp_B4e-4711667170NAC domain-containing protein 19
3swp_C4e-4711667170NAC domain-containing protein 19
3swp_D4e-4711667170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151462.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382690.0KF738269.1 Brassica napus NAC transcription factor 14 (NAC14.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151462.10.0PREDICTED: NAC domain-containing protein 14
RefseqXP_022570288.10.0NAC domain-containing protein 14-like
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A078GP160.0A0A078GP16_BRANA; BnaA05g17900D protein
TrEMBLA0A397ZHL40.0A0A397ZHL4_BRACM; Uncharacterized protein
TrEMBLM4D1440.0M4D144_BRARP; Uncharacterized protein
STRINGBra010193.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.10.0NAC 014