 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009151437.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
LSD |
| Protein Properties |
Length: 157aa MW: 16253.1 Da PI: 8.3234 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009151437.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 46 | 8.6e-15 | 38 | 62 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP GA+sV+Ca+C++V
XP_009151437.1 38 CSGCRNLLMYPVGATSVCCAVCNAV 62
************************9 PP
|
| 2 | zf-LSD1 | 46.6 | 5.4e-15 | 77 | 101 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+tV
XP_009151437.1 77 CGGCHTLLMYIRGATSVQCSCCHTV 101
************************9 PP
|
| 3 | zf-LSD1 | 36.8 | 6.4e-12 | 115 | 139 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+ lL+Y +GA+sV+Ca+C ++
XP_009151437.1 115 CGSCKMLLMYQYGARSVKCAVCSFI 139
**********************875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 157 aa
Download sequence Send
to blast |
MPVPLAPYPT PPATPLAPAY TPPSPANGST GGQSQLVCSG CRNLLMYPVG ATSVCCAVCN 60
AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGSCKM 120
LLMYQYGARS VKCAVCSFIT SVGVNISYLH KKGKHGF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB193295 | 0.0 | AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds. |
