PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151356.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 268aa    MW: 28543.8 Da    PI: 5.9062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019138159223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ Cg+ F ++     H+r+H
  XP_009151356.1 138 VCNVCGRAFHSWKAVFGHLRSH 159
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.663137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTNPEKMKVD GDTEKEKEDS SDEQWSDEES AMREIVLGLP ALSISSATFG VSIAVDEEEE  60
ARLNEQAVVA AELVIAAAEE AVMKEKSDGK KKKVRRQRKT MKLNNDDEAG GSSKGGEAKK  120
KQRKKTSEFT NLPRGPPVCN VCGRAFHSWK AVFGHLRSHK DRSYRGFLPP PRFSAPIRGV  180
MIPGPNSAFV RVVARGGSSG GVVAAGGGGG GPGGGASGGE GGRGVGIVMD VDRVEEEKQE  240
VTESGTAAKF DLNKSPPKDD DEEEDKTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151356.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151356.10.0PREDICTED: uncharacterized protein LOC103874642
TrEMBLM4D5710.0M4D571_BRARP; Uncharacterized protein
STRINGBra011628.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-39C2H2 family protein