PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151265.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 307aa    MW: 33626.2 Da    PI: 8.1093
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.42.1e-15147198455
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN+ L k l   +++
  XP_009151265.1 147 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 198
                     79****************************************9988777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-17144208IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.841146209IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-12147198No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-11147198No hitNo description
PfamPF001703.6E-13147195IPR004827Basic-leucine zipper domain
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
PfamPF124986.2E-15215265IPR020983Basic leucine-zipper, C-terminal
PfamPF124983.6E-6272302IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEKVFSVEET SCNNHLWSEP AKESDGTSGM NRSDSEWAFH RFIQESSAGE DGVSVSGPSS  60
PVDSHEYREI LKSKLNLACA AVAMKRDTSG RSENGGAAYT SSASDQGSLA SSTKATPVMS  120
STITSGSEFS GDDEEADGET NMHPTNVKRV KRMLSNRESA RRSRRRKQAH LSELETQVSQ  180
LRVENSNLMK GLTDVTQTFN DASVENRVLK ANLETLRAKV KMAEETVKRI TGFNPMFHTM  240
PQVSSVSNPS ETSNSLDTSS QVTTPEISSS SNKSKALMGC KMNRTESMRR VASLEHLQKR  300
IRSVGDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167RRSRRRKQ
2162167SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.267040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique valves, vasculature and funiculi. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, young leaves, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151265.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151264.10.0PREDICTED: basic leucine zipper 63
SwissprotB9DGI81e-153BZP63_ARATH; Basic leucine zipper 63
TrEMBLA0A3P5Z2H80.0A0A3P5Z2H8_BRACM; Uncharacterized protein
TrEMBLM4D0L20.0M4D0L2_BRARP; Uncharacterized protein
STRINGBra010010.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.11e-137bZIP family protein
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  5. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]