PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151264.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 314aa MW: 34427.2 Da PI: 8.8444 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.3 | 2.2e-15 | 154 | 205 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++ XP_009151264.1 154 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 205 79****************************************9988777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.6E-17 | 151 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.841 | 153 | 216 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.5E-12 | 154 | 205 | No hit | No description |
Pfam | PF00170 | 3.3E-13 | 154 | 202 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.7E-11 | 154 | 205 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 158 | 173 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 6.4E-15 | 222 | 272 | IPR020983 | Basic leucine-zipper, C-terminal |
Pfam | PF12498 | 3.7E-6 | 279 | 309 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MEKVFSVEET SCNNHLWSEP AKESDGTSGM NRSDSEWAFH RFIQESSAGE DGVSVSGPSS 60 PVDSHEYREI LKSKLNLACA AVAMKRGAFI KRQDTSGRSE NGGAAYTSSA SDQGSLASST 120 KATPVMSSTI TSGSEFSGDD EEADGETNMH PTNVKRVKRM LSNRESARRS RRRKQAHLSE 180 LETQVSQLRV ENSNLMKGLT DVTQTFNDAS VENRVLKANL ETLRAKVKMA EETVKRITGF 240 NPMFHTMPQV SSVSNPSETS NSLDTSSQVT TPEISSSSNK SKALMGCKMN RTESMRRVAS 300 LEHLQKRIRS VGDK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 174 | RRSRRRKQ |
2 | 169 | 174 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.26704 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique valves, vasculature and funiculi. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, young leaves, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151264.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353265 | 0.0 | AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151264.1 | 0.0 | PREDICTED: basic leucine zipper 63 | ||||
Swissprot | B9DGI8 | 1e-160 | BZP63_ARATH; Basic leucine zipper 63 | ||||
TrEMBL | A0A3P5Z2H8 | 0.0 | A0A3P5Z2H8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D0L2 | 0.0 | M4D0L2_BRARP; Uncharacterized protein | ||||
STRING | Bra010010.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6846 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.2 | 1e-141 | bZIP family protein |
Publications ? help Back to Top | |||
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