PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151238.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 414aa    MW: 44964 Da    PI: 4.6035
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731185.2e-37122220298
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f++s+k
  XP_009151238.1 122 LFQRLWTDEDEIELLRGFLDYvATHRGTSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSSHDQATFDISRK 216
                     79*******************8889***99999************************************************************** PP

          DUF573  95 iWgs 98 
                     iW++
  XP_009151238.1 217 IWNQ 220
                     **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-33123219IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSPSDEREAV FSLESPELEE DGSGGGGGGG AGGETDSDEE AVMPEPNAPD EDDDHEYEDL  60
NSPLVSAAAK SSSAATDTVT VALPAGSAVP VSSIPADSDP KWHRTTEIVH LRPPPLDDSR  120
RLFQRLWTDE DEIELLRGFL DYVATHRGTS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL  180
RRLKKKYRNV MSKFSSGKEV VFKSSHDQAT FDISRKIWNQ TGKIIGFEDN NVMEFEETNG  240
NNAHVEVDSE NVLEKKVTVS SGSRKRPRSR IGKIDEDKAV SLSDGPVPSV NLNENVSAFG  300
EFGDGRNLGG LIEETLKSCV SPLIKEMMNG TTGMMMAAVG GYPGGGGAHA MGVLSPMLMP  360
SVNPLGFGGG GGVGDERWRR QQILELEVYS RRLELVQEQI RATVNELKTM PSGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.116920.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151238.10.0PREDICTED: probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLM4D0I80.0M4D0I8_BRARP; Uncharacterized protein
STRINGBra009986.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-172DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]