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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009151004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 309aa MW: 34103 Da PI: 7.8097 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.1 | 1.7e-17 | 153 | 199 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 lkr rr+++NRe+ArrsR+RK++ ++ Le v++L++eN++L k+l XP_009151004.1 153 LKRMRRMYSNRESARRSRRRKQEHLADLESQVDSLKGENTTLYKQLI 199 8*****************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-12 | 150 | 214 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.9E-15 | 152 | 198 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.887 | 152 | 198 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.83E-12 | 153 | 200 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-12 | 154 | 198 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 157 | 172 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.1E-4 | 221 | 297 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MSITTYSSPP LFFPTKFHIQ KKMDGHTAKD TGMKRSASEL ALQEYLTKVM STSSALSRQE 60 STSPLEPSFD LKNHDHTGEL RDRHLLSETL FPAGVLLDAQ SSICTDSPVS ANKPEVRRRA 120 QRTTSVSSHG HSDEEDAETE AGQSEMTNDP NHLKRMRRMY SNRESARRSR RRKQEHLADL 180 ESQVDSLKGE NTTLYKQLID ATQLFRSAGT NNRILKSDVE TLRIKVKLAE DLVARGSLTS 240 SLNQLLQTHL SPPTQSINSL HYTGSTSPAV TVLSDQSMFA GITLSGQNSS PGLGNVSSEA 300 VSCVSDIWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 173 | RRSRRRKQ |
2 | 168 | 173 | SRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.18229 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009151004.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF310223 | 0.0 | AF310223.1 Arabidopsis thaliana bZIP protein BZO2H2 mRNA, complete cds. | |||
GenBank | AK226873 | 0.0 | AK226873.1 Arabidopsis thaliana mRNA for bZIP protein BZO2H2, clone: RAFL09-07-B02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009151003.2 | 0.0 | PREDICTED: basic leucine zipper 9 | ||||
Swissprot | Q9FUD3 | 1e-159 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | A0A397Z1X9 | 0.0 | A0A397Z1X9_BRACM; Uncharacterized protein | ||||
STRING | Bra009793.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-138 | basic leucine zipper 9 |
Publications ? help Back to Top | |||
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