 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009150861.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
TCP |
| Protein Properties |
Length: 250aa MW: 26968.1 Da PI: 10.3355 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009150861.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 125.3 | 6.7e-39 | 39 | 212 | 3 | 119 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88
+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ +++
XP_009150861.1 39 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSVRGSSTTIStstnctlss 132
79*************************************************************99999777.23333333322333455677777 PP
TCP 89 ................................................kaaksaa.kskksqksaasalnlakesrakar 119
++ ++ +++++q++aa+al ++++++++a
XP_009150861.1 133 sldhkpfilgkrlredsgggkddmgsfatpagfwavparpdfgqvwsfASHQEMFlQQQQQQQPAAAALFVNQQQQQQAA 212
88888899999999999999999999999999999999999999999743444442444444444444444444444443 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MSNNDGVMIS NGSLIEHQRQ QQQQQQQNLK QSSDGALVVK KPPAKDRHSK VDGRGRRIRM 60
PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST ASVSVRGSST 120
TISTSTNCTL SSSLDHKPFI LGKRLREDSG GGKDDMGSFA TPAGFWAVPA RPDFGQVWSF 180
ASHQEMFLQQ QQQQQPAAAA LFVNQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGAP 240
GSGRREDDQR
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB007648 | 2e-40 | AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15. |
| GenBank | AK118679 | 2e-40 | AK118679.1 Arabidopsis thaliana At5g23280 mRNA for unknown protein, complete cds, clone: RAFL19-95-A03. |
| GenBank | CP002688 | 2e-40 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
