PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 290aa MW: 31888.2 Da PI: 10.6383

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009150691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.6	2.9e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + + k R+ ++k++w++ XP_009150691.1 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDPQfssvlKSRSNVDLKDKWRN 55 79***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.388	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-15	2	59	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-7	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-9	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-14	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.55E-18	6	56	No hit	No description
SuperFamily	SSF46785	3.37E-14	120	201	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.7E-9	121	186	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.4E-11	121	190	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	17.903	123	191	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	6.0E-9	127	184	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0000786	Cellular Component	nucleosome
GO:0005730	Cellular Component	nucleolus
GO:0003691	Molecular Function	double-stranded telomeric DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043047	Molecular Function	single-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV LKHGTGKWRT ILSDPQFSSV LKSRSNVDLK DKWRNISVTA 60 LWGSRKKAKL ALRRNLPAPK QDDNNNTTPL SIVSLANGQE RTNPTSPGGF GAGSPQTHAS 120 KKSITSLDRI ILEAITNLKE TRGSDRTSIF LYIEENFKTP PNMKRNVAVR LKHLSSNGPL 180 VKIKHRYRFS TNFTSVGARQ KSPQLLLEGN NKKDSLSPEA DGEMFMIKGM TSQDAAEAAA 240 RAVAEAEFAI TEAEEAAKDA ERAEAEAEAA QIYAKAAVKA LKLRIRNHTW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.31616	0.0	bud\| flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00597	DAP	Transfer from AT5G67580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009150691.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150690.1	0.0	PREDICTED: telomere repeat-binding factor 2
Refseq	XP_009150691.1	0.0	PREDICTED: telomere repeat-binding factor 2
Refseq	XP_009150692.1	0.0	PREDICTED: telomere repeat-binding factor 2
Swissprot	Q9FJW5	1e-132	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	A0A3P5YJ52	0.0	A0A3P5YJ52_BRACM; Uncharacterized protein
STRING	Bra024438.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	1e-122	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]