PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150603.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 367aa    MW: 41951.5 Da    PI: 7.7765
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-1181117339
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                     ++k +rr+++NReAAr+sR+RKka++++Le+   +L 
  XP_009150603.1  81 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 117
                     6899**************************8655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-579142IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.77281123IPR004827Basic-leucine zipper domain
PfamPF001702.1E-881112IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-783118No hitNo description
CDDcd147084.37E-2283134No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-785111No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
PfamPF141446.6E-30169244IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MNSTSTHFVP PSRVGIYEPL HQFGMWGEPF KNNIGNGGSM NTPSHIIIPN NQKLDNNNLS  60
EDTSHGTPHM FDQEASTSRH PDKIQRRLAQ NREAARKSRL RKKAYVQQLE TSRLKLIQLE  120
QELDRARQQG FYVGNGIDTS SLGFSETMNP GIAAFEMEYG HWIEEQNRQI CELRTVLHGH  180
VTDVELRSLV ENTMKHYFEL FRMKSAAAKA DVFFVMSGMW RTSAERFFLW IGGFRPSDLL  240
KVLLPHFDVM TDQQVLDVCN LRQSCQQAED ALSQGMEKLQ HTLAECVARG GLGEGNYIPQ  300
VNSAMERLEA LVSFVNQADH LRHETLQQMH RILTTRQAAR GLLALGEYFQ RLRALSSSWA  360
TRHREPT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.319620.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150603.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018515521.10.0PREDICTED: transcription factor TGA1 isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A078F2R70.0A0A078F2R7_BRANA; BnaA06g24140D protein
TrEMBLA0A3P5YWD40.0A0A3P5YWD4_BRACM; Uncharacterized protein
TrEMBLE6Y8B70.0E6Y8B7_BRARP; TGA2 protein
STRINGBra024366.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]