PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150591.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 485aa    MW: 55446.8 Da    PI: 4.5107
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3441.95.5e-135373772354
                     XXXXXXXXXXXXXXXXXXXXXX..XXXXX...XXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa..tgakksn.........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                     +lkkrmwkd++l+++lk++k++      ++  t+    +         ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkpv+
  XP_009150591.1  37 DLKKRMWKDRNLMCKLKQQKQDDHDLSYPSssTSPP--SsspsssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKARGFVYGIVPEKGKPVT 129
                     89*******************987766665333333..2458888999*********************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S- CS
            EIN3  86 gasdsLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGk 177
                     g+sdsLr+WWke+v+fd+++p+a+++y   +a++li+s+es +   ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWP G+
  XP_009150591.1 130 GSSDSLRRWWKENVQFDQTAPTAVADYltlAAAQLISSSESLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPWWPDGT 221
                     *****************************9999***9977766...9************************************************ PP

                     -HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXX CS
            EIN3 178 elwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqs 271
                     elwwge+g ++ ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++++++vlnqee+++              
  XP_009150591.1 222 ELWWGEQGaTAFEHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL-------------- 302
                     ********9999******************************************************************966.............. PP

                     XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
            EIN3 272 pkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                     +++++s++  edv++++++  + v    + +++++ +krk +++e+ ++ s+   +tcq+s++++s+++l+f dkn ++ +e+
  XP_009150591.1 303 KRLKISDD--EDVDEEDQEPARLV----ALDQEQMGNKRKGEFVEEGAMLSN--LYTCQNSSCPSSDVSLGFVDKNLRTGHEM 377
                     57788887..55665555552333....335689****************99..8************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.7E-12437299No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-67175306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.35E-58177302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVEVQDMEPL SPIQDDDDCE DEEDELDRVN EDISYGDLKK RMWKDRNLMC KLKQQKQDDH  60
DLSYPSSSTS PPSSSPSSSA IVRRAEASRR KKMARSQDSV LKYMMKIMEV CKARGFVYGI  120
VPEKGKPVTG SSDSLRRWWK ENVQFDQTAP TAVADYLTLA AAQLISSSES LDPNSYIHML  180
HELQDTTLGS LLSALMQHCV PPQRRFPLEK GLAPPWWPDG TELWWGEQGA TAFEHGPPPY  240
RKPHDLRKAW KVSVLAAVIK HMSPNLERVR RLARQSKCLQ DKMMAKETDT WSRVLNQEEA  300
LLKRLKISDD EDVDEEDQEP ARLVALDQEQ MGNKRKGEFV EEGAMLSNLY TCQNSSCPSS  360
DVSLGFVDKN LRTGHEMECL YGTQEPIYQS NVSSDGLVRP MTTSDDDYSA SSKGKDTIDY  420
LNQDGNWLDY LWFERLHDFN CSDQATTVDL NQLPDHSDSN PTVNEEEFSL WDMGWEDRDI  480
YMSQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-571753051130Protein ETHYLENE INSENSITIVE 3
4zds_B3e-571753051130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150591.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ50.0EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A397Z0N10.0A0A397Z0N1_BRACM; Uncharacterized protein
STRINGBo3g100500.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]