PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150590.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 346aa    MW: 39375.6 Da    PI: 6.515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.2e-05227270855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er R +ri + +  L +llP       k  s   iL + v+++k Lq
  XP_009150590.1 227 TERERKQRIDDNIKALAKLLPRE----VKEDSSEVILNEIVDHVKLLQ 270
                     69********************9....566999***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.083219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-6219278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-6220277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNFNSVFQSL TELFPQFDER ILRTVAREHP TDADEAAAVV ISEVVPLFPQ EWEVHVPKRK  60
LHHLPPCKEP ETQHEDALSQ WLHPSHLPQS YLALLNEEEE EEKATPDLKP SLDYAVKKVV  120
LPSRDAAAGA RREVRTIYSA SNKTASSVVK PSIRVQSQTN NEQLSGSSSK VPVAGRSSRK  180
AAHPWSNYSE KLRSWKKRSS DFSQLHGQCK YVPSWQPNQS KCKSYTTERE RKQRIDDNIK  240
ALAKLLPREV KEDSSEVILN EIVDHVKLLQ LEMKELSLNR LGGEPISHPM TFIEGFGHYI  300
HHEEMMTKPL EEMMEDLLAN DPDAAARLLE SKGLYLMPLS SVQDLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150590.10.0PREDICTED: uncharacterized protein LOC103873934 isoform X2
TrEMBLA0A078FAH10.0A0A078FAH1_BRANA; BnaA06g24010D protein
STRINGBo3g100520.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.19e-15LJRHL1-like 2