PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150589.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 347aa    MW: 39474.8 Da    PI: 6.515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.2e-05228271855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er R +ri + +  L +llP       k  s   iL + v+++k Lq
  XP_009150589.1 228 TERERKQRIDDNIKALAKLLPRE----VKEDSSEVILNEIVDHVKLLQ 271
                     69********************9....566999***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-6220279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.083220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-6221278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNFNSVFQSL TELFPQFDER ILRTVAREHP TDADEAAAVV ISEVVPLFPQ EWEVHVPKRK  60
LHHLPPCKVE PETQHEDALS QWLHPSHLPQ SYLALLNEEE EEEKATPDLK PSLDYAVKKV  120
VLPSRDAAAG ARREVRTIYS ASNKTASSVV KPSIRVQSQT NNEQLSGSSS KVPVAGRSSR  180
KAAHPWSNYS EKLRSWKKRS SDFSQLHGQC KYVPSWQPNQ SKCKSYTTER ERKQRIDDNI  240
KALAKLLPRE VKEDSSEVIL NEIVDHVKLL QLEMKELSLN RLGGEPISHP MTFIEGFGHY  300
IHHEEMMTKP LEEMMEDLLA NDPDAAARLL ESKGLYLMPL SSVQDLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150589.10.0PREDICTED: uncharacterized protein LOC103873934 isoform X1
TrEMBLA0A078FAH10.0A0A078FAH1_BRANA; BnaA06g24010D protein
STRINGBo3g100520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.19e-15LJRHL1-like 2