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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009150535.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 188aa MW: 21697.2 Da PI: 4.7915 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009150535.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 106.4 | 3.5e-33 | 3 | 118 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ ++r+t++gyW + d++++++
XP_009150535.1 3 LPPGFRFFPTDEELVVHFLQRKASLLPCHP-DVIPDLDLYLYDPWDLPGKALGEGRQWYFYSRKT--------QQRVTSNGYWGSMEIDEPIFTS 88
79*************************999.99***************87778899*****9974........4799***************998 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++vg+kk ++fy g+ +kt+W+m+ey+l
XP_009150535.1 89 sTHKKVGIKKYFTFYLGN----SKTNWIMQEYSL 118
67888**********654....489*******97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MNLPPGFRFF PTDEELVVHF LQRKASLLPC HPDVIPDLDL YLYDPWDLPG KALGEGRQWY 60 FYSRKTQQRV TSNGYWGSME IDEPIFTSST HKKVGIKKYF TFYLGNSKTN WIMQEYSLPD 120 SSSSSKRSSK RSGRGSTSSS HKTDYSKWVI CRVYEQNCSE EEDDDGTELS CLDEVFLSLD 180 DLDEVSLP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 8e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-35 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-35 | 1 | 162 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-35 | 1 | 162 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC966746 | 0.0 | KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds. |