PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150535.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 188aa    MW: 21697.2 Da    PI: 4.7915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.5e-3331181128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdLp k+ +e ++wyf+s++         ++r+t++gyW +   d++++++
  XP_009150535.1   3 LPPGFRFFPTDEELVVHFLQRKASLLPCHP-DVIPDLDLYLYDPWDLPGKALGEGRQWYFYSRKT--------QQRVTSNGYWGSMEIDEPIFTS 88 
                     79*************************999.99***************87778899*****9974........4799***************998 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk ++fy g+    +kt+W+m+ey+l
  XP_009150535.1  89 sTHKKVGIKKYFTFYLGN----SKTNWIMQEYSL 118
                     67888**********654....489*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-431156IPR003441NAC domain
PROSITE profilePS5100540.3743156IPR003441NAC domain
PfamPF023655.7E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LQRKASLLPC HPDVIPDLDL YLYDPWDLPG KALGEGRQWY  60
FYSRKTQQRV TSNGYWGSME IDEPIFTSST HKKVGIKKYF TFYLGNSKTN WIMQEYSLPD  120
SSSSSKRSSK RSGRGSTSSS HKTDYSKWVI CRVYEQNCSE EEDDDGTELS CLDEVFLSLD  180
DLDEVSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-35116215171NO APICAL MERISTEM PROTEIN
1ut4_B8e-35116215171NO APICAL MERISTEM PROTEIN
1ut7_A8e-35116215171NO APICAL MERISTEM PROTEIN
1ut7_B8e-35116215171NO APICAL MERISTEM PROTEIN
4dul_A8e-35116215171NAC domain-containing protein 19
4dul_B8e-35116215171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667460.0KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150535.11e-138PREDICTED: NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK61e-114NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3P5YW731e-137A0A3P5YW73_BRACM; Uncharacterized protein
TrEMBLM4E6A21e-137M4E6A2_BRARP; Uncharacterized protein
STRINGBra024306.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-98xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]