PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150374.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 582aa    MW: 66242.9 Da    PI: 5.2803
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.61e-1202075771374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+av+s d+++a + L++++e++s++gd++qRl  ++++AL+ar+++    ++k+ +    s++++++ l+a+k f++++P+l +++
  XP_009150374.1 207 MRNLLMQCAQAVASFDQSRAFEKLKEIREHSSSHGDATQRLGYHLANALEARITG----TMKTPAFDVLSRTSMVDILKAYKEFVQACPTLAMCY 297
                     579***************************************************9....77777777777788********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      taN+ I e +++++++Hi+Df+i +G+QWp+L+qaL++Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++++ vpfe+n+ +ak++++
  XP_009150374.1 298 YTANRSIFELASKATALHIVDFGILYGFQWPCLIQALSARPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFSVPFEYNF-IAKAWDT 391
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P+++v++e +  +ns+ Fl+rf ea+ ++s+lfd++e+++++e++ r+
  XP_009150374.1 392 ITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREAMFHCSSLFDMFESNISEENDCRT 486
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vErel+ +++++v+acegaer++r et+++W+ r+ +aGF+p++l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+
  XP_009150374.1 487 LVERELIIKDAMSVIACEGAERFARPETYKQWQVRILRAGFRPAKLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 577
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.755181557IPR005202Transcription factor GRAS
PfamPF035143.6E-118207577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDAILQVPVD GFRFDNGSGS CCKPRNNLDS GTSGFTSFKE SESQNLSSPT ESTESQNHSS  60
PTESTVCSTN YPVLKYINDM LMEEDIEEQS CMLEDSLALQ AAERSFFEVL QEDQNPLQDD  120
SSLENLSPLT RRYHRLRDEE EEDDLEGGRK SKLPAISVVD ELAEKLEEVL LVCQKKDHGE  180
ATPNQTGRAK GSLNRSKPQK SDQPVDMRNL LMQCAQAVAS FDQSRAFEKL KEIREHSSSH  240
GDATQRLGYH LANALEARIT GTMKTPAFDV LSRTSMVDIL KAYKEFVQAC PTLAMCYYTA  300
NRSIFELASK ATALHIVDFG ILYGFQWPCL IQALSARPGG PPKLRVTGIE LPQPGFRPSE  360
RVEETGRRLK RFCDKFSVPF EYNFIAKAWD TITLDELVIN SGETTVVNCI LRLQYTPDET  420
VSLNSPRDTA LKLFRDINPD LFVFAEINGT YNSPFFLTRF REAMFHCSSL FDMFESNISE  480
ENDCRTLVER ELIIKDAMSV IACEGAERFA RPETYKQWQV RILRAGFRPA KLNKQIMKEG  540
KELVRERYHK DFVIDNDNHW MFQGWKGRVL YALSCWKPAK KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4321357824379Protein SCARECROW
5b3h_D4e-4321357824379Protein SCARECROW
5hyz_A4e-432115778375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.315240.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150374.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150374.10.0PREDICTED: scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLM4EYC10.0M4EYC1_BRARP; Uncharacterized protein
STRINGBra033813.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]