PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150299.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 333aa    MW: 37752.4 Da    PI: 6.5438
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.61.3e-13251301555
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +r+rr++kNRe+A rsR+R++a++ eLe +  +L++eN++Lkk +ee  k+
  XP_009150299.1 251 RRQRRMIKNRESAARSRARRQAYTVELELELNQLTEENMKLKKIVEENDKK 301
                     79****************************************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-10244310IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.714249297IPR004827Basic-leucine zipper domain
PfamPF001707.6E-12251303IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-12251302No hitNo description
SuperFamilySSF579591.31E-9251298No hitNo description
PROSITE patternPS000360254269IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MPGPESETST FHVFNHDLQT QLQTYPQETA VEEHAPVGRQ NSIMSLTLDE IQMKSGKSFG  60
AMNMDELLAN MWMTVEENNG GGAGAQQDGE KPTILPRQGS LSVPVPLCKK TVEEVWFEIQ  120
NGVQQPPPSS IAGQNPDEDN RRQQTLGEIT LEDFLVKAGV VQEPLKTTMK MSSSDFGYNP  180
EFGVGLHCQT QNNYGDNRTV YNENRPFYSG MGESSSCMTG SGRSDQYLTG LNAFRIQKRI  240
IDGPPEILME RRQRRMIKNR ESAARSRARR QAYTVELELE LNQLTEENMK LKKIVEENDK  300
KRRQEVMNRS TQITKEKNGD KLRRIRRMAS AGW
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtCould participate in abscisic acid-regulated gene expression during seed development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150299.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
RefseqXP_009150300.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
SwissprotQ8RYD60.0AI5L1_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBLA0A3P5YGJ20.0A0A3P5YGJ2_BRACM; Uncharacterized protein
STRINGBo3g122120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116522230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.11e-178bZIP family protein