PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009150251.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 18827.7 Da PI: 10.1253 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H XP_009150251.1 91 HTCPICGLEFPMGQALGGHMRKH 113 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.4E-7 | 37 | 113 | No hit | No description |
Pfam | PF13912 | 3.4E-11 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 39 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.034 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-10 | 91 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.824 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MVARSENLDQ TVEDTEATCL MLLSRVGECG RERGETRVFR CKTCMKEFSS FQALGGHRAS 60 HKKPVNNSSD EQSSSLSSGS VTKKTKKPLS HTCPICGLEF PMGQALGGHM RKHRNEKERG 120 ALVTRSFLPE AKFTTLKKSS SGKRVACFGM GLDPMERVIN LKLELGRTIY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009150251.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493639 | 5e-31 | AB493639.1 Arabidopsis thaliana At3g46070 gene for hypothetical protein, partial cds, clone: RAAt3g46070. | |||
GenBank | AL355775 | 5e-31 | AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12. | |||
GenBank | CP002686 | 5e-31 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | DQ446739 | 5e-31 | DQ446739.1 Arabidopsis thaliana clone pENTR221-At3g46070 zinc finger family protein (At3g46070) mRNA, complete cds. | |||
GenBank | DQ653133 | 5e-31 | DQ653133.1 Arabidopsis thaliana clone 0000012225_0000008871 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150251.1 | 1e-123 | PREDICTED: zinc finger protein ZAT8-like | ||||
Refseq | XP_013646942.1 | 1e-123 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 5e-72 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | M4DSI4 | 1e-121 | M4DSI4_BRARP; Uncharacterized protein | ||||
STRING | Bra019477.1-P | 1e-122 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-71 | C2H2 family protein |