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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009149464.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
SRS |
| Protein Properties |
Length: 346aa MW: 37881.2 Da PI: 6.6682 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009149464.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 226.5 | 4.9e-70 | 115 | 274 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel....kskkqsa 85
r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla + +k++++a + +r+ ++ sa
XP_009149464.1 115 RQGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAGLPTKRSREAssgggddD---DEREGDEngaqGGGGGSA 206
7899****************************************************999888887766775432...222222233334566789 PP
DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
l++ ++++a+s+ +e s+lP+e+s +avfrc+rvss+dd++ee+aYqtav+igGhvfkGiLydqG+++
XP_009149464.1 207 LACIRVVNASSS-GFESSHLPPELSLPAVFRCMRVSSIDDEDEEYAYQTAVNIGGHVFKGILYDQGPSD 274
999999999765.99***************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MAGLFYLGGR ENNKQDHHHQ DKDHNEDRSN NYLHLYKDEI YNNNKGFEIW PPQYFQQQQE 60
QQNHVAPPTN FYSFGMVPSG SSHNNNRSSN RSLYFNVVSD HEPVRSSTGR FTVTRQGSMN 120
CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA GLPTKRSREA 180
SSGGGDDDDE REGDENGAQG GGGGSALACI RVVNASSSGF ESSHLPPELS LPAVFRCMRV 240
SSIDDEDEEY AYQTAVNIGG HVFKGILYDQ GPSDDHRYSS SPAAIAAETS QHHLNLLASA 300
SSVATTTGVT ASNINNASID PSSVYTAAPI NSFVTAATSF FASPRS
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In young plants, detected at a low level only in the root tips and lateral root primordia. In fully open flowers, primarily observed in the filaments and anthers. {ECO:0000269|PubMed:20706774}. |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in the filaments of flowers, the shoot apex regions and pollen. Also present in leaves. {ECO:0000269|PubMed:20706774}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205268 | 0.0 | GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds. |
