 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009149358.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
MYB |
Protein Properties |
Length: 306aa MW: 35281.1 Da PI: 6.9974 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009149358.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.4 | 5.3e-16 | 63 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd++lv +++++G +W++ +++ g+ R +k+c++rw++yl
XP_009149358.1 63 KGEWTAEEDQKLVAYINEHGLCDWRSLPERAGLQRGGKSCRLRWLNYL 110
799*******************************************97 PP
|
2 | Myb_DNA-binding | 57 | 4.6e-18 | 116 | 160 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T++E+e ++++++ lG++ W++Ia++m +Rt++++k++w++
XP_009149358.1 116 RGKFTPQEEEAIIKLHAVLGNR-WAAIAKKME-NRTDNDIKNHWNSC 160
89********************.*********.***********975 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MSCTHIPHYS LPFKINYLLK LKKLFIFINI LSYHEVINVA SRGLLGLRKM GRKTWFDDDG 60 MKKGEWTAEE DQKLVAYINE HGLCDWRSLP ERAGLQRGGK SCRLRWLNYL RPGIRRGKFT 120 PQEEEAIIKL HAVLGNRWAA IAKKMENRTD NDIKNHWNSC LKKRLSKNGI DPMTHEPIIN 180 NLTVTTTNEE ECGSSPTNTS LTTESHFSSS PSGSACLLNK LAAGIASRQH DLDRIKNILL 240 DRKITINDQD EEGGLRRDQK IGEEDDFLIW DDGEVRRYMD TDPMEYETTP YDSVLYESTQ 300 ILDYLF
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF974753 | 0.0 | KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds. |