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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009149330.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MYB |
Protein Properties |
Length: 341aa MW: 38407.2 Da PI: 6.2672 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009149330.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ + + +G g W+t +++ g++R++k+c++rw +yl
XP_009149330.1 15 KGAWTPEEDQKLISYLNNHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62
79********************************************97 PP
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2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +T++E++ ++ +++++G++ W+ Iar ++ gRt++++k++w+++
XP_009149330.1 68 RGEFTEDEELSIISLHALHGNK-WSDIARGLP-GRTDNEIKNYWNTH 112
899*******************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MVRTPCCKPE LGLKKGAWTP EEDQKLISYL NNHGEGGWRT LPEKAGLKRC GKSCRLRWAN 60 YLRPDIKRGE FTEDEELSII SLHALHGNKW SDIARGLPGR TDNEIKNYWN THIKKRLIKK 120 GVDPVTHKSL ISETSKSENL PEILNNQNII QTIITSKDDL GNNENVKNEA NKSRLSSARF 180 LNRVANRFGK KINQRVISEI IGSGGPLITT TTTTSVTVDS ISDKSTSFSF TPTSYLLNQM 240 TVNGNGNATS PPSMFSDSSV NDPLMCRSVD NIGFSGFLNE QHAMMLEESC VENTEFMNEL 300 TRFLREDVNN DVEVTPVYEY KDDFEEIDNY FACVNLLTNP T
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in vegetative parts of the plant, mainly in mature rosette leaves and in trichomes. Detected in roots, but not in mature flowers or siliques. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ584298 | 0.0 | FJ584298.1 Brassica rapa subsp. pekinensis MYB domain protein 51-3 mRNA, partial cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Benstein RM, et al.
Arabidopsis phosphoglycerate dehydrogenase1 of the phosphoserine pathway is essential for development and required for ammonium assimilation and tryptophan biosynthesis. Plant Cell, 2013. 25(12): p. 5011-29 [PMID:24368794] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Frerigmann H,Gigolashvili T
MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana. Mol Plant, 2014. 7(5): p. 814-28 [PMID:24431192] - Frerigmann H,Gigolashvili T
Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] - Peskan-Berghöfer T, et al.
Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots. New Phytol., 2015. 208(3): p. 873-86 [PMID:26075497] - Frerigmann H,Glawischnig E,Gigolashvili T
The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana. Front Plant Sci, 2015. 6: p. 654 [PMID:26379682] - Frerigmann H, et al.
Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products. Mol Plant, 2016. 9(5): p. 682-695 [PMID:26802248] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors. Plant Physiol. Biochem., 2016. 102: p. 70-9 [PMID:26913794] - Xu J, et al.
Pathogen-Responsive MPK3 and MPK6 Reprogram the Biosynthesis of Indole Glucosinolates and Their Derivatives in Arabidopsis Immunity. Plant Cell, 2016. 28(5): p. 1144-62 [PMID:27081184] - Miao H, et al.
Glucose enhances indolic glucosinolate biosynthesis without reducing primary sulfur assimilation. Sci Rep, 2016. 6: p. 31854 [PMID:27549907]
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