PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149281.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 263aa    MW: 29733.2 Da    PI: 7.6129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149281.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08158205455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  XP_009149281.1 158 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMATMLDEIINYVQSLQ 205
                     8*************************8....366999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.12E-9152209No hitNo description
SuperFamilySSF474591.96E-16152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16154215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MANFENLSSE FQTIAMDIYS SMTQAADLNN NNNISSNLQF QTFPPFSTCL DSLFLHHRHP  60
QQLLDLPGKY PGSDNNLSTT STLYHSSHNN VDETKKRKAL LQPLSSSENS SVSDQLNINT  120
TETGCSRRGK RLKKKNQEEE KEREVVHVRA RRGQATDSHS LAERVRRGKI NERLRCLQDI  180
VPGCYKSMGM ATMLDEIINY VQSLQNQVEL LSMKLTAASS FYDFNSETDA VDSMQRAKAR  240
EAVEMGRQTR DGNPVLHLSA WSL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149281.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149281.10.0PREDICTED: transcription factor BEE 1
SwissprotQ8GZ131e-123BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A078GI840.0A0A078GI84_BRANA; BnaA06g12520D protein
TrEMBLA0A397Z3S10.0A0A397Z3S1_BRACM; Uncharacterized protein
STRINGBra025910.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-107BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]