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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009149206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 291aa MW: 31939.5 Da PI: 9.1078 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.3 | 5.6e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 + +WT++E++ l+ +v+++G+g Wk I r R+ ++k++w+++ XP_009149206.1 5 KSKWTEDEEDALLGGVRKHGPGKWKNILRDPEfaavlSLRSNIDLKDKWRNL 56 679**********************************88***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.132 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-14 | 2 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-13 | 3 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.93E-17 | 7 | 56 | No hit | No description |
SMART | SM00526 | 1.4E-14 | 124 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.85E-12 | 125 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.3E-8 | 126 | 187 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 19.756 | 126 | 193 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 4.9E-9 | 128 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGKEKSKWTE DEEDALLGGV RKHGPGKWKN ILRDPEFAAV LSLRSNIDLK DKWRNLSVPA 60 DIQGSKDKVR TPKIKAAAFQ LAAVAAAATT PSPSSVSSPV APPLPRSGSS DLSIGDSCNM 120 LIDAKNAPRY DGMIFEALSA LKDANGSDVT TIFNFIEQKM YEVPEKRVLG SRLRRLAAQG 180 KLEKTQNLYR MNNNSFLTMR TPVPARPKEA NAKPRQTANS QGLTVSQEKI DLSSGTAAFK 240 LYELDGKLEV LSGAVDDRAR MTELAERAEI MLLLAEELHE RCCRGEIVEL N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009149206.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149206.1 | 0.0 | PREDICTED: telomere repeat-binding factor 4 isoform X2 | ||||
Swissprot | F4I7L1 | 1e-111 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | A0A397YWR1 | 0.0 | A0A397YWR1_BRACM; Uncharacterized protein | ||||
STRING | Bra025967.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-110 | MYB_related family protein |
Publications ? help Back to Top | |||
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