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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009149048.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
AP2 |
| Protein Properties |
Length: 340aa MW: 38467.3 Da PI: 6.3267 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009149048.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 47.8 | 3.6e-15 | 59 | 116 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
y+GV++++++gr++A+++d s+n k+ ++++lg ++ ++ Aa+a++ a++k++g
XP_009149048.1 59 YRGVTRHRWTGRYEAHLWDkNSWNEtqsKKgRQVYLGAYDEEDAAARAYDLAALKYWG 116
9******************888877877557**********99*************98 PP
|
| 2 | AP2 | 50.6 | 4.9e-16 | 159 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV ++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
XP_009149048.1 159 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDVAAIEYRG 210
89****************99966...3.6*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0040008 | Biological Process | regulation of growth |
| GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process |
| GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MHISVQDSPV MKEISRRSKK TSVEDKTTDE SSASSVVVKT KRKRQSQPRD APPQRSSMYR 60
GVTRHRWTGR YEAHLWDKNS WNETQSKKGR QVYLGAYDEE DAAARAYDLA ALKYWGRDTV 120
LNFPQCNYEE DLKEMDSQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV 180
FGNKYLYLGT YATQEEAAIA YDVAAIEYRG LNAVTNFDIN RYLKLPAPES PIDAANIPHS 240
DPSPFINPDH ESAPSQSQSS SDENDDRKTK FLKSSPCSNA EEVVGPSTPP EIAPSRRSFP 300
DDIQTYFGCQ DSGKVEDDDV IFGGLDSFLT PDFYSELNDC
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
