![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009148866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 265aa MW: 29720.7 Da PI: 10.3697 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.6 | 1.8e-15 | 196 | 248 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r +r++kNRe+A rsR+RK+a++ eLe +v+ L+aeN +L+ + e+l+ +a XP_009148866.1 196 RRHKRMIKNRESAARSRARKQAYTNELEIEVAHLQAENARLRRQQEQLRMAAA 248 699*****************************************999987766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-11 | 188 | 256 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.381 | 194 | 244 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.1E-14 | 196 | 247 | No hit | No description |
CDD | cd14707 | 5.68E-27 | 196 | 250 | No hit | No description |
SuperFamily | SSF57959 | 3.38E-11 | 196 | 244 | No hit | No description |
Pfam | PF00170 | 5.9E-13 | 196 | 245 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 199 | 214 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MMSSAKHQRN HRISVTNKNK ILNTVSSISS SSPSSSSSSL HSSQDSQEAQ KSSLITMEEV 60 WEDIHHLNRH SQHPQHNHEP RFRSHNHQNP DSIFQDFLNG PLNHEPTIPM GSSSNGHTTT 120 VTALFSSSPL PPPATVLSLN SGAGFEFLDN QDPLVTSNLH SHNHLTDVPS FNTSLEDFTC 180 FGKKRGQESN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELEIEVAHLQ AENARLRRQQ 240 EQLRMAAANQ QPKKKTLQRS STAPF |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009148866.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189569 | 0.0 | AC189569.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009148866.1 | 0.0 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-127 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A398APQ6 | 1e-169 | A0A398APQ6_BRACM; Uncharacterized protein | ||||
STRING | Bra011648.1-P | 1e-156 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-120 | bZIP family protein |