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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009148641.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 400aa MW: 46033.3 Da PI: 7.1358 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009148641.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 88.4 | 8e-28 | 81 | 162 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W ++e++ Li +rr m+ ++++k++k+lWee+s+kmre+gf rsp++C++kw+nl k+ykk k++++++ +s +++y++++e
XP_009148641.1 81 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEEISAKMREKGFDRSPTMCTDKWRNLLKEYKKAKHHDRGN---VSAKMSYYKEIE 162
********************************************************************95...77889****998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MFVSDKPRPN DFYKDDNTNS STAARNMIID GDLQPHNHHP HHNHNHNHHH HNHLQPQQIL 60 LGESSGEDHE VKAPKKRAET WVQDETRSLI MFRRGMDGLF NTSKSNKHLW EEISAKMREK 120 GFDRSPTMCT DKWRNLLKEY KKAKHHDRGN VSAKMSYYKE IEDILRERSK KVTTQYSKSP 180 NTPPIAKVDS FMQFTDKGFD DPSISFGSVE ANGRPGLNLE RSLDHDGHPL AITTVDAVPA 240 NGVPPWNWRE TPGNGGDAHG QPFGGRVITV KFGDYTRRIG VDGTAEAIKE TIRSAFSLRT 300 RRAFWLEDED QVVRCLDRDM PLGNYLLHVD GGVAIRVCHY DESNQLPVHT EEKIFYTEED 360 YRDFLARRGW TYLQVDGFRN IDNMDDLQAG AVYRGVRERM
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |