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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009148605.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 393aa MW: 45347.2 Da PI: 5.9065 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009148605.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 176.6 | 6.7e-55 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+ppGfrFhPtdeelv++yL+kkv+++++e+ ++ik++d+yk+ePwdL+ k+ +ee+ +wyfFs++dkky+tg+r+nratk g+Wkatg+dk++
XP_009148605.1 7 VPPGFRFHPTDEELVDYYLRKKVASNRIEI-DFIKDIDLYKIEPWDLQDlcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKVGFWKATGRDKAI 100
69****************************.99**************9434554444459*********************************** PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+ +++lvg++ktLvfykgrap+g+k+dW+mheyrle
XP_009148605.1 101 YL-RHSLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
**.8899****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 393 aa
Download sequence Send
to blast |
MNSFSLVPPG FRFHPTDEEL VDYYLRKKVA SNRIEIDFIK DIDLYKIEPW DLQDLCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKVGF WKATGRDKAI YLRHSLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYGDQLS 180 FMASELETNG PRRILPNQQQ HHQYEHQQQL PYGLNASAYI LNNPNLQCKQ ELELQYNHLV 240 QHDLLHESPL SLIQLPQLES PNIQQAYSSN SLPYGTSNND NNSSEIANLQ QSNLAHEEQI 300 NQGNQSFSSL YMNSGNQQAM DQVTDWRVLD KFVASQLSNE DAATTSASLQ KNAKDTSNVE 360 CQVDEEKNQK RVSDMGDEYA ASTSSSCQID LWK
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Uniprot | TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |