PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148582.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 262aa    MW: 29905.1 Da    PI: 8.1112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1372124155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +r++h e+Er+RR+++ s f  Lr +lP       ++K s ++ + +Av+YIk+L+
  XP_009148582.1  72 KRAKHREIERQRRQEVTSLFKHLRYILPVqY---VKGKRSSSDHVHEAVNYIKDLE 124
                     79***************************66...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1469144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-969128No hitNo description
PROSITE profilePS5088813.21171123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1172141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1172124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAFPSSSSFT VDFAYENELD FSSLLTPSTL ISFQDPNPTN PIIHTENDGR QRIRETTVTD  60
EIPKEDVEPK NKRAKHREIE RQRRQEVTSL FKHLRYILPV QYVKGKRSSS DHVHEAVNYI  120
KDLEKKIKEV SEKRDRIKRS ITHSPPAGYC PIRSLAASCS SSSLSSYCSC VGDTHIDVKV  180
RTCLVGIEIV VSCCFRHESC LSRVLQLLVQ EQSFNVVSCI STRLHLRIIH TIVSEVEKGI  240
EINFSELQEK IIKNMGTSCF NF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17183KRAKHREIERQRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148582.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148582.10.0PREDICTED: transcription factor bHLH55
SwissprotQ9LN951e-124BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A397YXV00.0A0A397YXV0_BRACM; Uncharacterized protein
STRINGBra019773.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-119bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]