PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148559.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 444aa    MW: 49442.5 Da    PI: 5.0145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11263305754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  XP_009148559.1 263 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 305
                     79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-17259327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9262305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-13263309No hitNo description
Gene3DG3DSA:4.10.280.109.2E-16263319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.28E-8370433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNGDGVWLDH DAGERSQAGY NDEPVPWVRN PEENWFNNSQ PHDDSQNEFR FNGGGFPLNP  60
SENLLLLLQQ SIDSSSPFQH FTLDATTPQQ QQQQQESFLA TKACIASLLT VPTTTNNNNN  120
NPFDDFGFDS PFLGQLNQIP NSMSFPVMTS PPPDFLSSRS CNVFSPLEFE GLASGVFENR  180
AKVLKPLEIL PSSGSELTLF QKRAAMRESS SSKMCNSDSS SSEMRREIGD ETSPGIVDIF  240
NYESDEHNHN KGKKKGMPAK NLMAERRRRK KLNDRLYMLR SVVPKISKMD RASILGDAID  300
YLKELLQRIN DLHTELESTP SSSSGLTPSP QMLPYRVKEE LCPSSSSLPS AKGEQARIEV  360
KLREGKAVNI HMFCGRRPGL LLSTMRALDD LGLDVQQAVI SCFNGFALDV FRAEVNIQCQ  420
EGHEVFPEQI KAVLLDTAGY SGLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252270KKKGMPAKNLMAERRRRKK
2264271ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.127112e-63flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. Broad expression within stomatal cell lineages of leaf epidermis, except in mature guard-cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:18641265}.
Functional Description ? help Back to Top
Source Description
UniProtMediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148559.10.0PREDICTED: transcription factor SCREAM2 isoform X2
SwissprotQ9LPW30.0SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLM4DTF10.0M4DTF1_BRARP; Uncharacterized protein
STRINGBra019794.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-150bHLH family protein
Publications ? help Back to Top
  1. Tarasov VA,Khadeeva NV,Mel'nik VA,Ezhova TA,Shestakov SV
    The Atlg12860 gene of Arabidopsis thaliana determines cathelicidin-like antimicrobial activity.
    Dokl. Biol. Sci., 2009.
    [PMID:19760875]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Emmerstorfer A, et al.
    Over-expression of ICE2 stabilizes cytochrome P450 reductase in Saccharomyces cerevisiae and Pichia pastoris.
    Biotechnol J, 2015. 10(4): p. 623-35
    [PMID:25641738]
  5. Lee HG,Seo PJ
    The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis.
    Plant J., 2015. 82(6): p. 962-77
    [PMID:25912720]
  6. Raissig MT,Abrash E,Bettadapur A,Vogel JP,Bergmann DC
    Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(29): p. 8326-31
    [PMID:27382177]
  7. Fu ZW,Wang YL,Lu YT,Yuan TT
    Nitric oxide is involved in stomatal development by modulating the expression of stomatal regulator genes in Arabidopsis.
    Plant Sci., 2016. 252: p. 282-289
    [PMID:27717464]
  8. de Marcos A, et al.
    A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development.
    Plant Physiol., 2017. 174(2): p. 823-842
    [PMID:28507175]