PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148529.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 369aa    MW: 41756.1 Da    PI: 6.9665
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05162181120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_009148529.1 162 FSCSVCNKTFNRFNNMQMHM 181
                     89*****************9 PP
2zf-C2H210.60.0018247270123
                     EEET.TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                     ++C  +C k+F  + + ++H +++
  XP_009148529.1 247 FRCRkKCEKTFAVRGDWRTHEKNC 270
                     89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-5158183No hitNo description
PROSITE profilePS5015710.263162189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5162181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4234268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFGTKHGSAT HSLINLRGSN KSESKYKINE PFITNSSSLH CLSPPFTQTP SFSFISPSLS  60
SMFNDNQYCI PGDEDSVVLR LGPPGQQYPN NHKPTSTKPS PNHEIDHNLP LTNPNDVTVA  120
LHIGPPVSEK ETSGDNHEGL TARQGQYWIP SLSQILVGPT QFSCSVCNKT FNRFNNMQMH  180
MWGHGSQYRK GPESLRGTKS SSSILRLPCY CCAEGCKNNI DHPRAKPLKD FRTLQTHYKR  240
KHGAKPFRCR KKCEKTFAVR GDWRTHEKNC GKVWFCVCGS DFKHKRSLKD HVRAFGDGHA  300
AHTVGDRVVS IGEGDEDDDD DDDHMEEEDE RDDDEEEEDG NGESGREEKN YGIRYEHFRR  360
YGQISNDNH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148529.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148529.20.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-180ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A397YVD30.0A0A397YVD3_BRACM; Uncharacterized protein
TrEMBLM4DTH90.0M4DTH9_BRARP; Uncharacterized protein
STRINGBra019822.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-178C2H2-like zinc finger protein