PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148403.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 402aa    MW: 46559.4 Da    PI: 6.2106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12216258754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+riN+++  Lr ++P+      +K++K  +L  Av+YI++L
  XP_009148403.1 216 HSERKRRERINQRIYALRAVVPNV-----TKMNKNGTLSDAVDYINQL 258
                     57*********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-1611155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.03E-11207263No hitNo description
SuperFamilySSF474591.44E-15207272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.574209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-13215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-14216272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10216258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MMMRGGERVK EFLRPFVDSR EWDFCVIWKL GDDPSRRFIE WVGCCCSGSY IDKNIKHEHV  60
EEEETQKMSS ICRDEDNKHH IRTLACEALS RFPLFMPLYP GIHGEVVMSK SPKWLVNSGP  120
GSKQDIFSTR VLVPVRDGLV ELFSFIMKPV DESLVDLIIS HCNTFFEPYP EQTLPFRIIS  180
KEEESMLMHK EEDVVMQNTM DDKKVAKENF KSKNLHSERK RRERINQRIY ALRAVVPNVT  240
KMNKNGTLSD AVDYINQLLV EKQKLEDELR GFNEIESRRI AAEEESAIAN PHTEKVASRL  300
NKIVNNEVSL EVYETGERGF LIRVAQEHNK QDGFKRLIEA VDSCGLEIID VNFTRLDLRV  360
MTVLNVKASK DGTTPENLRD LLLKMMMRTS ENPNVESLRQ CT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148403.10.0PREDICTED: transcription factor bHLH90 isoform X1
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLM4DTS10.0M4DTS1_BRARP; Uncharacterized protein
STRINGBra019914.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein