PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148369.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 268aa    MW: 29305.7 Da    PI: 5.9754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148369.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-11152199455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_009148369.1 152 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 199
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.54E-11146203No hitNo description
SuperFamilySSF474595.89E-18146217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-18148216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDPGGMMNEA GAYNLAEIWP YPTINGGAAV NTSMRSGVSF GGPNLVHQFA DSNLISNTNC  60
NDPARMSHAL SQAVVAGIAG ARKRREAGAE DNNVVSGSDG HDANDGDSKK QKTTGCEDEV  120
EVGTLDQKKQ QLPEPPKDYI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK  180
VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNSRMTPGI EVFPPKEFDQ QTFENQGMQF  240
GAQGTREYSR GASPEWLHMQ VGGGFERS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.190160.0bud| flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is specifically expressed in flowers, mostly in petals, inflorescence and flower buds. Isoform 2 is expressed ubiquitously (leaves, flowers and stems). {ECO:0000269|PubMed:16902407}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148369.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0863731e-109AY086373.1 Arabidopsis thaliana clone 24644 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148369.10.0PREDICTED: transcription factor BPE
SwissprotQ0JXE72e-96BPE_ARATH; Transcription factor BPE
TrEMBLM4DTU20.0M4DTU2_BRARP; Uncharacterized protein
STRINGBra019935.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-118BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]