PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009148091.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 475aa MW: 53100.8 Da PI: 7.7586 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.6 | 3.7e-10 | 171 | 212 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_009148091.1 171 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 212 5889*************************8766666655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-7 | 168 | 245 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.289 | 170 | 214 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.2E-7 | 171 | 212 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.9E-8 | 171 | 215 | No hit | No description |
CDD | cd14708 | 1.64E-22 | 172 | 224 | No hit | No description |
SuperFamily | SSF57959 | 6.25E-7 | 172 | 214 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 175 | 190 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.2E-28 | 253 | 328 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MATNHNHSHH LSYSLLHGLS NNPPPPGFIN QDGSSSFDFG ELEEAIVLQG VKYRNDETKP 60 RGGGGATTLE MFPSWPIRTH QTLPTEESSK SEGESTDSGS ANFSSKAESQ QPESPMSNKQ 120 NHQLMLQHQR NNNMANSAST SGLPSTSRTP GPPKSTEDKR KATTSGKLLD AKTLRRLAQN 180 REAARKSRLR KKAYVQQLES SRIKLSQLEQ ELQRARSQGM FMGGCGPPGP NITSGAAMFD 240 MEYERWLEED NRHMSEIRTG LQAHLSDNDL RLIVDGYIAH FDEVLRLKAV AAKADVFHLI 300 IGTWMSPAER CFIWMAGFRP SDLIKILVSQ MDLLTEQQLM GIYSLQHSSQ QAEEALSQGL 360 EQLQQSLIDT LAASPVMDGM QQMAVALGKI SNLEGFIRQA DNLRQQTVHQ LRRILTVRQA 420 ARCFLVIGEY YGRLRALSSL WLSRPRETLI SDETSCQTTT DLQMVQSSRN HFSNF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009148091.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ314757 | 0.0 | AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene). | |||
GenBank | HQ132743 | 0.0 | HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009148091.1 | 0.0 | PREDICTED: transcription factor TGA2.2 isoform X2 | ||||
Refseq | XP_013641095.1 | 0.0 | transcription factor TGA9-like isoform X2 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | M4DQ43 | 0.0 | M4DQ43_BRARP; Uncharacterized protein | ||||
STRING | Bra018634.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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