PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009147935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 632aa MW: 71064.6 Da PI: 8.4929 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 9e-06 | 229 | 249 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+fa C+ G +C+F+H XP_009147935.1 229 VPCRYFAL-RNCRNGTSCRFSH 249 69**9999.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.831 | 225 | 253 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MSSSGRKRVS KWDAKQEATE NGNDYVEKSG SYYHDKDPEH AGFYPEGNGR NGSSRRSVPD 60 DDDNDDERLK SRQQHQGEAW PSRSRVSHDE GDDAMMSYYD TRKSSEQDET RQPYWDRPRT 120 RRSGSRSNSR SMSRSRSRSP LQRVRRDARG SYDRHKTRDT DGRYSRAGDY NDRDTKYYTE 180 DSREQYPLRR SDYPEDHSNS RREASDPILR SHRDRRDVPE REYNRVSNVP CRYFALRNCR 240 NGTSCRFSHH GAPPARRSPE RKPQDQMFSS GTTERMRNSH RWNERSDTGK SCEGSKGNNN 300 NNNNGSWIGD MEMSPDWNYG VKTLKKPLNE EHSVVKDTLA PGSAAISHSH HGFSNNIIAN 360 SAPPVQAFNQ KIENHSAVPY QSTPLAVGGS QVLPPPPPPA VTTNLPESGI AQSTVSREEL 420 NHISNISASL AQFFGNGQPI PQLQSTLNPK ETMQVPEVYG KEQQSSLAQS DLLSNNSIQT 480 GVVPAVQILN SDTLIAGNPK ASEEEASKEP DVRKTEQEGG ETTGKDVEEE EEEDDGAGDE 540 NSKKEKDPKG MKAFKFALVE IVKELLKPAW KEGGMNKDAY KNIVKKAVDK VTGAIQTGNI 600 PQTQEKIDHY LSASKPKLTK LVQAYISKVK KS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009147935.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147935.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like | ||||
TrEMBL | M4DQG6 | 0.0 | M4DQG6_BRARP; Uncharacterized protein | ||||
STRING | Bra018759.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-17 | C3H family protein |