PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147888.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 368aa    MW: 40299.9 Da    PI: 9.794
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.56.8e-14289339555
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e+ k+
  XP_009147888.1 289 RRQKRMIKNRESAARSRARKQAYTLELEAEIENLKQLNQDLQRKQAEIMKT 339
                     79***************************************8776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-12285350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.461287338IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.06E-9289336No hitNo description
Gene3DG3DSA:1.20.5.1704.4E-13289344No hitNo description
PfamPF001701.6E-11289342IPR004827Basic-leucine zipper domain
CDDcd147071.22E-23289341No hitNo description
PROSITE patternPS000360292307IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGTHINFNSL DVDSSGGNGS DNSQSKPLGR QSSLYSLTFD ELQSTLGEPG KEFGSMNMDE  60
LLKNIWTAEE TTQPIMTTTS SVASVQQPSS GFAPGGGSLV QRQGSLTLPR TLSQKTVDEV  120
WKHLMSKDSS NGSDAPERQE TLGEMTLEDF LLRAGVVKED SQQNQNNCVS TGLGFGFGQP  180
NQNNISSKGN NSSMILNQAP ATMQQQQQLQ PPHQRLPPTI YPKQANVTFA APVNNNNSGF  240
AAMGRGGVTV ASTSPSAENN AAWSSPVPYV FGGQGRRSNT GVVEKVVERR QKRMIKNRES  300
AARSRARKQA YTLELEAEIE NLKQLNQDLQ RKQAEIMKTQ KNELKEPAKQ RPWLAKTQCL  360
RRTLTGPW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.88681e-54leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00087SELEXTransfer from AT1G49720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147888.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1228920.0JX122892.1 Brassica napus ABA-responsive element binding factor 1 (ABF1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147888.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
SwissprotQ9M7Q51e-170AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLM4DQK70.0M4DQK7_BRARP; Uncharacterized protein
STRINGBra018800.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.11e-147abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]