 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009147812.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
RAV |
| Protein Properties |
Length: 338aa MW: 38711.8 Da PI: 8.3283 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009147812.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 28.6 | 3.6e-09 | 45 | 91 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
+ykGV + + +g W A+I+ +kr++lg+f +a Aa+a++ a k++
XP_009147812.1 45 KYKGVVQLP-NGHWGAQIYTD-----HKRIWLGTFRSAAVAAAAYDSASIKIR 91
8********.8******9883.....4*******************9988876 PP
|
| 2 | B3 | 87.3 | 1.3e-27 | 171 | 266 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+ltpsdv+k++rlv+pkk+a ++ +g+ e+++++++d+ r+W+++++y+++s+++v+t+GW++Fvk++ Lke+D +vF+
XP_009147812.1 171 FRKELTPSDVGKLNRLVIPKKYAVRYlpllrddqkereEGEIVEDVEVVFYDRGMRQWKFRYCYWRSSQSFVFTSGWNGFVKEKSLKEKDAIVFY 265
89*****************************98776664444599*************************************************9 PP
E CS
B3 84 l 84
XP_009147812.1 266 T 266
3 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MNTEDAKTES PTVSSGCFLP LKKRMKLHNN PPNNALEVVV SGSAKYKGVV QLPNGHWGAQ 60
IYTDHKRIWL GTFRSAAVAA AAYDSASIKI RSYDANMHRN FPWSEYTVHE PAFQNEHTTE 120
AVLSMIKDGT YQRKYREFLK KVQSKIVGGY NMVGSKQDQE SKKGFSCTEL FRKELTPSDV 180
GKLNRLVIPK KYAVRYLPLL RDDQKEREEG EIVEDVEVVF YDRGMRQWKF RYCYWRSSQS 240
FVFTSGWNGF VKEKSLKEKD AIVFYTCDVP TLEGQRKKFL MIDVHCSSDE GSAVCDEEVN 300
ETGGVKTENF SNSKLEEEEE TKSVENKGGF MLFGVRIQ
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 8e-23 | 169 | 267 | 6 | 96 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 8e-23 | 169 | 267 | 6 | 96 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
